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DB built by FlyBase

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Gene: Oscillin FBgn0031717

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Description

Oscillin

Gene Synonyms

Location

Primary_assembly 2L: 5,547,086-5,549,614 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 8 transcripts (splice variants) and 79 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Oscillin-RB	FBtr0079102	1529	273aa	FBpp0078735	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE92 Q9VMP9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Oscillin-RE	FBtr0307062	1586	266aa	FBpp0297905	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCR7	-	-
Oscillin-RG	FBtr0307064	1413	272aa	FBpp0297907	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND31	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Oscillin-RF	FBtr0307063	1388	273aa	FBpp0297906	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE92 Q9VMP9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Oscillin-RH	FBtr0331675	1299	273aa	FBpp0304065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE92 Q9VMP9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Oscillin-RA	FBtr0079101	1216	273aa	FBpp0078734	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE92 Q9VMP9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Oscillin-RC	FBtr0307060	1206	273aa	FBpp0297903	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NE92 Q9VMP9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Oscillin-RD	FBtr0307061	1156	272aa	FBpp0297904	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND31	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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