Summary
- Splice variants
- Transcript comparison
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Sequence
- Secondary Structure
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- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
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Genetic Variation
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DB built by FlyBase

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Gene: RluA-2 FBgn0032256

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Description

RluA pseudouridine synthase 2

Gene Synonyms

Location

Primary_assembly 2L: 10,477,073-10,482,975 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 74 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
RluA-2-RA	FBtr0080032	2013	547aa	FBpp0079622	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKU8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
RluA-2-RC	FBtr0304133	2001	543aa	FBpp0293073	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRH0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
RluA-2-RE	FBtr0337003	1988	219aa	FBpp0307933	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFI9	-	-
RluA-2-RD	FBtr0337002	1880	547aa	FBpp0307932	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKU8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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