Summary
- Splice variants
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Literature
Metazoan Compara
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: CG10543 FBgn0034570

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Location

Primary_assembly 2R: 20,996,220-21,007,740 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 32 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG10543-RG	FBtr0479792	7070	1666aa	FBpp0428125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6M3Q7L9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG10543-RF	FBtr0332594	7073	1635aa	FBpp0304845	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFE1 Q058W4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10543-RA	FBtr0071524	7070	1634aa	FBpp0071453	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E3CTQ8 Q8MSN5 Q9W2N8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG10543-RD	FBtr0303195	5618	1631aa	FBpp0292294	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86BG2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG10543-RE	FBtr0332593	5550	1634aa	FBpp0304844	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2N8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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