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DB built by FlyBase

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Gene: Atg18a FBgn0035850

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Description

Autophagy-related 18a

Gene Synonyms

Location

Primary_assembly 3L: 8,186,857-8,191,118 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 7 transcripts (splice variants), 26 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Atg18a-RE	FBtr0321320	2267	447aa	FBpp0302863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PER1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Atg18a-RC	FBtr0076693	2526	377aa	FBpp0076416	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSF0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Atg18a-RB	FBtr0076692	2382	377aa	FBpp0076415	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSF0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Atg18a-RF	FBtr0321321	2291	372aa	FBpp0302864	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHS3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Atg18a-RG	FBtr0346547	2235	377aa	FBpp0312165	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSF0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Atg18a-RA	FBtr0076691	2097	377aa	FBpp0076414	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSF0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Atg18a-RD	FBtr0321319	1980	435aa	FBpp0302862	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEY7	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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