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DB built by FlyBase

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Gene: PGRP-LC FBgn0035976

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Description

Peptidoglycan recognition protein LC

Gene Synonyms

Location

Primary_assembly 3L: 9,338,810-9,348,336 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 10 transcripts (splice variants), 13 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PGRP-LC-RB	FBtr0089491	2039	520aa	FBpp0088492	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDN2 Q9GNK5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
PGRP-LC-RC	FBtr0089492	2579	511aa	FBpp0088998	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
PGRP-LC-RI	FBtr0346814	1982	501aa	FBpp0312389	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WMR4	-	-
PGRP-LC-RH	FBtr0308349	1935	520aa	FBpp0300668	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDN2 Q9GNK5	-	-
PGRP-LC-RG	FBtr0301773	1928	345aa	FBpp0290987	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI87	-	-
PGRP-LC-RA	FBtr0089490	1876	500aa	FBpp0088491	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI88	-	-
PGRP-LC-RD	FBtr0300290	1781	500aa	FBpp0289518	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI88	-	-
PGRP-LC-RK	FBtr0472541	1278	330aa	FBpp0422539	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2U8U141	-	-
PGRP-LC-RJ	FBtr0472540	1192	340aa	FBpp0422538	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2U8U0I3	-	-
PGRP-LC-RE	FBtr0300291	1172	329aa	FBpp0289519	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI89	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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