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DB built by FlyBase

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Gene: Afti FBgn0038223

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Description

Aftiphilin

Gene Synonyms

Location

Primary_assembly 3R: 14,320,191-14,326,689 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 11 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Afti-RE	FBtr0474641	4603	1161aa	FBpp0423206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K2J4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Afti-RD	FBtr0310001	5111	1035aa	FBpp0301707	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VFK5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Afti-RC	FBtr0310000	4225	1035aa	FBpp0301706	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VFK5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Afti-RB	FBtr0273391	3923	1035aa	FBpp0271899	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VFK5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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