Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: Nct FBgn0039234

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Description

Nicastrin

Gene Synonyms

Location

Primary_assembly 3R: 24,851,601-24,854,869 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 74 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Nct-RE	FBtr0334570	2631	699aa	FBpp0306637	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHG2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Nct-RC	FBtr0301865	2768	695aa	FBpp0291079	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIV8 Q9VC27	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Nct-RD	FBtr0306087	2606	692aa	FBpp0297224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KS07	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Nct-RA	FBtr0084705	2409	695aa	FBpp0084083	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIV8 Q9VC27	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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