Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

DB built by FlyBase

.

Gene: CG12054 FBgn0039831

.

Gene Synonyms

Location

Primary_assembly 3R: 31,220,702-31,231,259 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 39 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12054-RA	FBtr0085758	3130	628aa	FBpp0085120	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9Z6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12054-RE	FBtr0335408	4280	516aa	FBpp0307391	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K810	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12054-RF	FBtr0335409	2408	516aa	FBpp0307392	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4K810	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG12054-RB	FBtr0113312	2259	406aa	FBpp0112224	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IHE2	-	-

.

Summary

.

.