Summary
- Splice variants
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DB built by FlyBase

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Gene: pasha FBgn0039861

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Description

partner of drosha

Gene Synonyms

Location

Primary_assembly 3R: 31,617,977-31,622,217 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants) and 70 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pasha-RA	FBtr0085820	2847	642aa	FBpp0085181	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9V7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
pasha-RC	FBtr0337032	2579	642aa	FBpp0307961	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8G4 Q9V9V7	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
pasha-RB	FBtr0337031	2123	580aa	FBpp0307960	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KI70	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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