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DB built by FlyBase

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Gene: Sox102F FBgn0039938

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Description

Sox102F

Gene Synonyms

Location

Primary_assembly 4: 800,436-834,393 reverse strand.

BDGP6.46:AE014135.4

About this gene

This gene has 4 transcripts (splice variants), 69 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sox102F-RB	FBtr0100600	3804	618aa	FBpp0100057	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59DN5 Q6NNT9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sox102F-RD	FBtr0334489	2902	580aa	FBpp0306557	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V480	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Sox102F-RC	FBtr0334488	2840	580aa	FBpp0306556	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8STH7 Q9V480	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Sox102F-RA	FBtr0089252	2767	580aa	FBpp0088312	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V480	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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