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DB built by FlyBase

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Gene: Liprin-alpha FBgn0046704

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Description

Liprin-alpha

Gene Synonyms

Location

Primary_assembly 2L: 6,723,903-6,732,766 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 5 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Liprin-alpha-RE	FBtr0329943	4466	1214aa	FBpp0302975	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCD4	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Liprin-alpha-RC	FBtr0329941	5970	1158aa	FBpp0302973	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PC73	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Liprin-alpha-RD	FBtr0329942	4949	1205aa	FBpp0302974	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCR7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Liprin-alpha-RB	FBtr0079301	4814	1201aa	FBpp0078931	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM93	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Liprin-alpha-RA	FBtr0079300	4466	1201aa	FBpp0078930	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM93	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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