Summary
- Splice variants
- Transcript comparison
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Sequence
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Literature
Metazoan Compara
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- Gene tree (Metazoa)
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- Gene tree (Insects)
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- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
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- Structural variants
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DB built by FlyBase

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Gene: CG31145 FBgn0051145

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Location

Primary_assembly 3R: 23,605,751-23,669,659 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 75 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG31145-RG	FBtr0474143	4524	982aa	FBpp0423142	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4D6K5D6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG31145-RC	FBtr0290056	4524	980aa	FBpp0288495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4VCL2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG31145-RF	FBtr0336459	3714	528aa	FBpp0307565	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4VCL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG31145-RD	FBtr0290057	3519	915aa	FBpp0288496	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IJC2	-	-
CG31145-RB	FBtr0084480	2595	528aa	FBpp0083871	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4VCL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG31145-RA	FBtr0084479	2586	528aa	FBpp0083870	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4VCL2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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