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DB built by FlyBase

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Gene: Cnot4 FBgn0051716

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Description

CCR4-NOT transcription complex subunit 4

Gene Synonyms

Location

Primary_assembly 2L: 10,396,716-10,403,206 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 11 transcripts (splice variants) and 65 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Cnot4-RK	FBtr0331638	3972	1062aa	FBpp0304028	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PB92	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RH	FBtr0304112	3963	1059aa	FBpp0293055	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MRH8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Cnot4-RJ	FBtr0331637	3826	1054aa	FBpp0304027	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFI0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RB	FBtr0080013	3644	1051aa	FBpp0079603	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RA	FBtr0080009	3615	1051aa	FBpp0079599	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RL	FBtr0331639	3612	1050aa	FBpp0304029	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCL9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RI	FBtr0304113	3603	1047aa	FBpp0293056	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPB9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RE	FBtr0080012	3554	1051aa	FBpp0079602	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RC	FBtr0080010	3552	1051aa	FBpp0079600	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RD	FBtr0080011	3482	1051aa	FBpp0079601	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VKX1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cnot4-RG	FBtr0080014	3370	1047aa	FBpp0079604	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IPB9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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