Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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Molecular interactions
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- Gene history

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DB built by FlyBase

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Gene: CG40498 FBgn0069969

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Location

Primary_assembly 2R: 924,636-951,252 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 17 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG40498-RG	FBtr0308892	3210	268aa	FBpp0301019	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y4V5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG40498-RJ	FBtr0344186	1681	268aa	FBpp0310598	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y4V5	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG40498-RF	FBtr0302340	1605	268aa	FBpp0291544	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y4V5	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG40498-RI	FBtr0308894	1443	268aa	FBpp0301021	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y4V5	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG40498-RK	FBtr0344187	1439	268aa	FBpp0310599	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8Y4V5	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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