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Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: alpha-Spec FBgn0250789

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Description

alpha Spectrin

Gene Synonyms

Location

Primary_assembly 3L: 1,778,485-1,795,328 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 76 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
alpha-Spec-RB	FBtr0332878	7721	2457aa	FBpp0305100	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGV6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
alpha-Spec-RC	FBtr0332879	8317	2447aa	FBpp0305101	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBI5	-	-
alpha-Spec-RD	FBtr0332880	8251	2425aa	FBpp0305102	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDQ0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
alpha-Spec-RA	FBtr0072789	8221	2415aa	FBpp0072672	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P13395	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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