Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene families
Literature
Metazoan Compara
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- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG42249 FBgn0259101

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Location

Primary_assembly X: 11,096,273-11,108,148 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42249-RD	FBtr0332384	1827	558aa	FBpp0304658	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZ32	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG42249-RB	FBtr0299513	1820	557aa	FBpp0288787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VZ33	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42249-RC	FBtr0299514	1818	558aa	FBpp0288788	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2RVD4 B4F645 B4F646 B4F652 B4F653 C0MM33 C0MM35 Q4V534 Q9VZ32	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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