Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: sqa FBgn0259678

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Description

spaghetti-squash activator

Gene Synonyms

Location

Primary_assembly 2R: 9,716,348-9,748,121 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 3 transcripts (splice variants) and 8 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
sqa-RD	FBtr0310326	6062	888aa	FBpp0302009	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7Y7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sqa-RC	FBtr0299930	3214	888aa	FBpp0289207	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7Y7 Q1RKW2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
sqa-RB	FBtr0299929	2057	446aa	FBpp0289206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95SK9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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