Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
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Genetic Variation
- Variant table
- Variant image
- Structural variants
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ID History
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DB built by FlyBase

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Gene: CG42542 FBgn0260659

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Location

Primary_assembly 3R: 15,196,598-15,203,074 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants) and 74 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42542-RD	FBtr0301104	2215	503aa	FBpp0290326	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIL1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG42542-RE	FBtr0301103	2190	503aa	FBpp0290325	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIL1	-	-
CG42542-RF	FBtr0302324	2063	323aa	FBpp0291530	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4XVE8 Q7KSI9	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG42542-RC	FBtr0301102	1675	323aa	FBpp0290324	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSI9	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG42542-RB	FBtr0301101	1650	323aa	FBpp0290323	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KSI9	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG42542-RG	FBtr0302325	1550	313aa	FBpp0291531	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8INE9	-	-

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Summary

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