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- Splice variants
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DB built by FlyBase

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Gene: whd FBgn0261862

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Description

withered

Gene Synonyms

Location

Primary_assembly 2R: 10,469,473-10,478,567 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 77 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
whd-RD	FBtr0301282	2907	782aa	FBpp0290497	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V3K9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
whd-RB	FBtr0088308	2901	780aa	FBpp0087400	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQH9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
whd-RC	FBtr0301281	2888	782aa	FBpp0290496	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V3K9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
whd-RA	FBtr0088307	2882	780aa	FBpp0087399	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQH9	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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