Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Molecular function
- GO: Cellular component
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Genetic Variation
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DB built by FlyBase

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Gene: Sap130 FBgn0262714

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Description

Sin3A-associated protein 130

Gene Synonyms

Location

Primary_assembly 3L: 12,805,902-12,813,036 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants) and 58 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Sap130-RC	FBtr0075929	4270	1294aa	FBpp0075661	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F3YDM9 F3YDN3 Q8IQI0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Sap130-RB	FBtr0075928	4159	1257aa	FBpp0075660	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQH9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap130-RE	FBtr0114506	4060	1257aa	FBpp0112998	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQH9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap130-RA	FBtr0075927	4045	1219aa	FBpp0075659	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9XZ09	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap130-RG	FBtr0332044	4018	1210aa	FBpp0304354	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCC4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Sap130-RF	FBtr0332043	4015	1209aa	FBpp0304353	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PI47	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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