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DB built by FlyBase

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Gene: Stacl FBgn0263980

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Description

Stac-like

Gene Synonyms

Location

Primary_assembly 2R: 15,401,096-15,471,884 forward strand.

BDGP6.46:AE013599.5

About this gene

This gene has 18 transcripts (splice variants) and 12 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Stacl-RJ	FBtr0330013	10954	1970aa	FBpp0303048	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEV7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Stacl-RH	FBtr0330011	11747	1166aa	FBpp0303046	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KG20	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Stacl-RV	FBtr0344208	11050	1198aa	FBpp0310617	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGK0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Stacl-RI	FBtr0330012	10954	1951aa	FBpp0303047	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFR2 A1ZA11 Q8SWT1	-	-
Stacl-RO	FBtr0344201	10924	1156aa	FBpp0310610	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KER3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Stacl-RX	FBtr0475072	10917	1368aa	FBpp0423272	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6M3QAK8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Stacl-RU	FBtr0344207	10723	1089aa	FBpp0310616	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFI1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Stacl-RE	FBtr0330010	7086	546aa	FBpp0303045	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYE9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Stacl-RR	FBtr0344204	6916	1059aa	FBpp0310613	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF73	-	-
Stacl-RQ	FBtr0344203	6739	1000aa	FBpp0310612	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF79	-	-
Stacl-RS	FBtr0344205	6562	941aa	FBpp0310614	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFG4	-	-
Stacl-RP	FBtr0344202	6547	936aa	FBpp0310611	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LFF3	-	-
Stacl-RT	FBtr0344206	6370	877aa	FBpp0310615	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYE4	-	-
Stacl-RA	FBtr0330007	6193	818aa	FBpp0303042	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1EC92	-	-
Stacl-RW	FBtr0475071	6186	1030aa	FBpp0423271	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6M3Q7M2 Q29QR2	-	-
Stacl-RN	FBtr0344200	4584	558aa	FBpp0310609	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0C4DHC0	-	-
Stacl-RM	FBtr0330016	2382	217aa	FBpp0303051	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYE8	-	-
Stacl-RC	FBtr0330009	1842	155aa	FBpp0303044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYE7 Q4V4H3	-	-

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Summary

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