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DB built by FlyBase

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Gene: Dscam2 FBgn0265296

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Description

Down syndrome cell adhesion molecule 2

Gene Synonyms

Location

Primary_assembly 3L: 7,159,199-7,189,931 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 15 transcripts (splice variants), 233 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Dscam2-RP	FBtr0330337	8881	2101aa	FBpp0303369	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEK5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Dscam2-RJ	FBtr0299551	10070	2074aa	FBpp0288826	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VS29	-	-
Dscam2-RS	FBtr0346856	8881	2046aa	FBpp0312398	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0S0WFE8 C4IXW7	-	-
Dscam2-RN	FBtr0330335	8881	2085aa	FBpp0303367	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PED2	-	-
Dscam2-RH	FBtr0299549	8863	2040aa	FBpp0288824	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F0JAU0	-	-
Dscam2-RO	FBtr0330336	8851	2036aa	FBpp0303368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4IXW9 M9PEU0	-	-
Dscam2-RQ	FBtr0339133	8681	1968aa	FBpp0308278	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JAR2	-	-
Dscam2-RR	FBtr0339134	7573	1967aa	FBpp0308279	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JGC8	-	-
Dscam2-RL	FBtr0302123	6457	1814aa	FBpp0291333	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI62	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Dscam2-RK	FBtr0299552	6270	1833aa	FBpp0288827	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
Dscam2-RM	FBtr0302124	6210	1813aa	FBpp0291334	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JI61	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Dscam2-RI	FBtr0299550	6202	1809aa	FBpp0288825	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Dscam2-RG	FBtr0299548	6195	1808aa	FBpp0288823	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
Dscam2-RF	FBtr0299547	3631	752aa	FBpp0288822	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IJ57	-	-
Dscam2-RE	FBtr0299546	3476	543aa	FBpp0288821	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8G2 Q058U7	-	-

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Summary

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