Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
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Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG4836 FBgn0270925

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Gene Synonyms

Location

Primary_assembly 3R: 20,013,872-20,018,248 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 5 transcripts (splice variants), 112 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4836-RE	FBtr0273259	3942	1224aa	FBpp0271767	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0M7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG4836-RD	FBtr0273258	3938	843aa	FBpp0271766	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0M8 E0R969	-	-
CG4836-RC	FBtr0083828	3927	1217aa	FBpp0083237	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VDQ9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG4836-RA	FBtr0083826	3923	836aa	FBpp0083235	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E0R969 Q8MRL0	-	-
CG4836-RB	FBtr0083827	3918	1214aa	FBpp0083236	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IN62	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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