Summary
- Splice variants
- Transcript comparison
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Molecular function
- GO: Biological process
- GO: Cellular component
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DB built by FlyBase

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Gene: Abd-B FBgn0000015

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Description

Abdominal B

Gene Synonyms

Location

Primary_assembly 3R: 16,927,212-16,972,236 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 10 transcripts (splice variants), 91 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Abd-B-RH	FBtr0415463	4870	493aa	FBpp0373669	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUV3 P09087	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Abd-B-RJ	FBtr0415465	8184	270aa	FBpp0373671	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Abd-B-RB	FBtr0083384	4415	493aa	FBpp0082826	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUV3 P09087	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Abd-B-RI	FBtr0415464	3715	270aa	FBpp0373670	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Abd-B-RE	FBtr0083385	3701	270aa	FBpp0089276	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304 Q86P38	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Abd-B-RG	FBtr0346764	3260	286aa	FBpp0312359	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A126GUV9	-	-
Abd-B-RD	FBtr0083383	3260	270aa	FBpp0082825	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Abd-B-RF	FBtr0330709	3260	323aa	FBpp0303552	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGT1	-	-
Abd-B-RC	FBtr0083381	3251	270aa	FBpp0082823	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Abd-B-RA	FBtr0083382	3078	270aa	FBpp0082824	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V304	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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