Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: chif FBgn0000307

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Description

chiffon

Gene Synonyms

Location

Primary_assembly 2L: 16,342,430-16,352,628 reverse strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 102 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
chif-RA	FBtr0080838	6624	1711aa	FBpp0080396	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9NK54	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
chif-RE	FBtr0475053	6575	576aa	FBpp0423267	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6H2EHD1	-	-
chif-RB	FBtr0080839	6575	1695aa	FBpp0080397	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2J5V4 M9PD16	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
chif-RD	FBtr0321313	6170	1695aa	FBpp0302856	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PD16	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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