Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- Orthologues
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Genetic Variation
- Variant table
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DB built by FlyBase

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Gene: EcR FBgn0000546

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Location

Chromosome 2R: 6,087,873-6,169,087 reverse strand.

BDGP6.28:AE013599.5

About this gene

This gene has 6 transcripts (splice variants), 123 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	FBtr0302439	8415	878aa	FBpp0291631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGY2 P34021	NM_001169590.2 NM_165461.3 NM_165462.2 NM_165463.2 NM_165464.3 NM_165465.3 NP_001163061.1 NP_724456.1 NP_724457.1 NP_724458.1 NP_724459.1 NP_724460.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0086010	5233	849aa	FBpp0085351	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	NM_165461.3 NM_165462.2 NM_165463.2 NP_724456.1 NP_724457.1 NP_724458.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2
-	FBtr0086008	5108	849aa	FBpp0085349	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	NM_165461.3 NM_165462.2 NM_165463.2 NP_724456.1 NP_724457.1 NP_724458.1
-	FBtr0086012	4984	669aa	FBpp0085353	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	NM_165464.3 NP_724459.1
-	FBtr0086011	4092	878aa	FBpp0085352	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JGY2 P34021	NM_001169590.2 NM_165461.3 NM_165462.2 NM_165463.2 NM_165464.3 NM_165465.3 NP_001163061.1 NP_724456.1 NP_724457.1 NP_724458.1 NP_724459.1 NP_724460.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS P5
-	FBtr0086009	3740	849aa	FBpp0085350	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4UZ51	NM_165461.3 NM_165462.2 NM_165463.2 NP_724456.1 NP_724457.1 NP_724458.1	APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.APPRIS ALT2

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Summary

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Gene-based displays