Ecdysone receptor
Primary_assembly 2R: 6,087,873-6,169,087 reverse strand.
BDGP6.32:AE013599.5
This gene has 6 transcripts (splice variants), 132 orthologues and 2 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| EcR-RG | FBtr0302439 | 8415 | 878aa | FBpp0291631 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JGY2 P34021 | NM_001169590 NM_001169590.2 NM_165461.3 NM_165462.2 NM_165463.2 NM_165464.3 NM_165465.3 NP_001163061 NP_001163061.1 NP_724456.1 NP_724457.1 NP_724458.1 NP_724459.1 NP_724460.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| EcR-RE | FBtr0086010 | 5233 | 849aa | FBpp0085351 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4UZ51 | NM_165461.3 NM_165462.2 NM_165463 NM_165463.2 NP_724456.1 NP_724457.1 NP_724458 NP_724458.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| EcR-RA | FBtr0086008 | 5108 | 849aa | FBpp0085349 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4UZ51 | NM_165461 NM_165461.3 NM_165462.2 NM_165463.2 NP_724456 NP_724456.1 NP_724457.1 NP_724458.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| EcR-RC | FBtr0086012 | 4984 | 669aa | FBpp0085353 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_165464 NM_165464.3 NP_724459 NP_724459.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| EcR-RB | FBtr0086011 | 4092 | 878aa | FBpp0085352 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JGY2 P34021 | NM_001169590.2 NM_165461.3 NM_165462.2 NM_165463.2 NM_165464.3 NM_165465 NM_165465.3 NP_001163061.1 NP_724456.1 NP_724457.1 NP_724458.1 NP_724459.1 NP_724460 NP_724460.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| EcR-RD | FBtr0086009 | 3740 | 849aa | FBpp0085350 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A4UZ51 | NM_165461.3 NM_165462 NM_165462.2 NM_165463.2 NP_724456.1 NP_724457 NP_724457.1 NP_724458.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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