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DB built by FlyBase

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Gene: mud FBgn0002873

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Description

mushroom body defect

Gene Synonyms

Location

Primary_assembly X: 14,247,732-14,258,595 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 7 transcripts (splice variants) and 7 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
mud-RH	FBtr0308327	8457	2567aa	FBpp0300646	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR55	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
mud-RI	FBtr0308328	8643	2113aa	FBpp0300647	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NGE4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
mud-RL	FBtr0332622	8259	2501aa	FBpp0304868	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEK6 Q1KN24 Q9NCW7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
mud-RF	FBtr0308325	7938	2394aa	FBpp0300644	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TR6 Q9VY43	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
mud-RJ	FBtr0308329	7097	2165aa	FBpp0300648	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEG4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
mud-RG	FBtr0308326	6286	1933aa	FBpp0300645	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR54	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
mud-RK	FBtr0332621	6223	1912aa	FBpp0304867	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PJN0 Q9NCL3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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