Summary
- Splice variants
- Transcript comparison
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Sequence
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DB built by FlyBase

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Gene: ninaC FBgn0002938

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Description

neither inactivation nor afterpotential C

Gene Synonyms

Location

Primary_assembly 2L: 7,377,702-7,384,344 forward strand.

BDGP6.32:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ninaC-RB	FBtr0079436	4843	1501aa	FBpp0079064	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P10676	NM_001273260.1 NM_001273261.1 NM_078779 NM_078779.3 NM_164747.1 NP_001260189.1 NP_001260190.1 NP_523503 NP_523503.2 NP_723271.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ninaC-RC	FBtr0334835	5295	1135aa	FBpp0306863	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU0	NM_001273260 NM_001273260.1 NM_001273261.1 NM_164747.1 NP_001260189 NP_001260189.1 NP_001260190.1 NP_723271.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ninaC-RA	FBtr0079437	3991	1135aa	FBpp0079065	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU0	NM_001273260.1 NM_001273261.1 NM_164747 NM_164747.1 NP_001260189.1 NP_001260190.1 NP_723271 NP_723271.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ninaC-RD	FBtr0334836	3647	1135aa	FBpp0306864	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PCU0	NM_001273260.1 NM_001273261 NM_001273261.1 NM_164747.1 NP_001260189.1 NP_001260190 NP_001260190.1 NP_723271.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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