Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: svr FBgn0004648

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Description

silver

Gene Synonyms

Location

Primary_assembly X: 496,446-509,072 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 11 transcripts (splice variants), 170 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
svr-RG	FBtr0070087	5828	1439aa	FBpp0089126	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J9Z1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
svr-RD	FBtr0070084	5904	1404aa	FBpp0089123	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
svr-RB	FBtr0070081	5890	1406aa	FBpp0070080	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P42787	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
svr-RH	FBtr0290016	5842	1437aa	FBpp0288455	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
svr-RM	FBtr0344738	5611	1406aa	FBpp0311070	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P42787	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
svr-RI	FBtr0290017	5267	1292aa	FBpp0288456	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
svr-RN	FBtr0344739	4986	1439aa	FBpp0311071	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J9Z1	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
svr-RE	FBtr0070085	3144	433aa	FBpp0089124	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AWJ5	-	-
svr-RF	FBtr0070086	3130	435aa	FBpp0089125	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DME3	-	-
svr-RJ	FBtr0340146	3092	433aa	FBpp0309132	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6AWJ5	-	-
svr-RL	FBtr0344737	2851	435aa	FBpp0311069	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DME3	-	-

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Summary

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