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DB built by FlyBase

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Gene: orb FBgn0004882

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Description

oo18 RNA-binding protein

Gene Synonyms

Location

Primary_assembly 3R: 23,260,610-23,280,856 reverse strand.

BDGP6.54:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 105 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
orb-RG	FBtr0334498	8899	915aa	FBpp0306565	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VCN7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
orb-RA	FBtr0084384	4862	915aa	FBpp0083776	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4G7D4 Q24433 Q9VCN7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
orb-RB	FBtr0084385	4251	913aa	FBpp0083777	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMZ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb-RD	FBtr0100227	3258	913aa	FBpp0099606	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAC0 Q8IMZ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb-RF	FBtr0301491	3079	617aa	FBpp0290706	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IHC3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb-RC	FBtr0084386	2957	559aa	FBpp0083778	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IMZ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
orb-RE	FBtr0100228	1964	559aa	FBpp0099607	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IHE0 Q8IMZ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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