pale
Primary_assembly 3L: 6,713,356-6,719,525 reverse strand.
BDGP6.32:AE014296.5
This gene has 3 transcripts (splice variants), 133 orthologues and 2 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| ple-RC | FBtr0345585 | 3806 | 579aa | FBpp0311654 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B5X0J4 P18459 | NM_001300026 NM_001300026.1 NM_057549.3 NM_057550.4 NP_001286955 NP_001286955.1 NP_476897.1 NP_476898.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ple-RB | FBtr0076957 | 3124 | 579aa | FBpp0076666 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B5X0J4 P18459 | NM_001300026.1 NM_057549.3 NM_057550 NM_057550.4 NP_001286955.1 NP_476897.1 NP_476898 NP_476898.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ple-RA | FBtr0076956 | 2911 | 508aa | FBpp0076665 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | NM_057549 NM_057549.3 NP_476897 NP_476897.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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