Calnexin 99A
Primary_assembly 3R: 29,315,254-29,319,644 reverse strand.
BDGP6.32:AE014297.3
This gene has 4 transcripts (splice variants), 128 orthologues and 1 paralogue.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| Cnx99A-RB | FBtr0085438 | 2623 | 605aa | FBpp0084804 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VAL7 | NM_001043302.2 NM_057809 NM_057809.5 NM_170407.3 NP_001036767.1 NP_477157 NP_477157.1 NP_733286.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Cnx99A-RE | FBtr0334873 | 2620 | 604aa | FBpp0306896 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q0KHZ9 | NM_001043301 NM_001043301.2 NP_001036766 NP_001036766.2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| Cnx99A-RA | FBtr0085437 | 2615 | 605aa | FBpp0084803 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | O02393 Q24097 Q86P47 Q86P87 Q8T410 Q9VAL7 | NM_001043302.2 NM_057809.5 NM_170407 NM_170407.3 NP_001036767.1 NP_477157.1 NP_733286 NP_733286.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| Cnx99A-RD | FBtr0110909 | 2092 | 605aa | FBpp0110209 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VAL7 | NM_001043302 NM_001043302.2 NM_057809.5 NM_170407.3 NP_001036767 NP_001036767.1 NP_477157.1 NP_733286.1 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
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