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DB built by FlyBase

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Gene: Vsp37A FBgn0016038

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Description

Vacuolar protein sorting 37A

Gene Synonyms

Location

Primary_assembly X: 621,530-623,051 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 6 transcripts (splice variants), 118 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vsp37A-RA	FBtr0089726	1343	200aa	FBpp0088667	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O77259	NM_001272172.1 NM_080295 NM_080295.3 NM_166848.2 NP_001259101.1 NP_525034 NP_525034.2 NP_726679.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Vsp37A-RC	FBtr0089725	1332	200aa	FBpp0088666	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O77259 Q9N6W9	NM_001272172.1 NM_080295.3 NM_166848 NM_166848.2 NP_001259101.1 NP_525034.2 NP_726679 NP_726679.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Vsp37A-RD	FBtr0089724	1331	196aa	FBpp0088665	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YZA5	NM_001272171.1 NM_166849.2 NM_166850 NM_166850.2 NP_001259100.1 NP_726680.1 NP_726681 NP_726681.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Vsp37A-RE	FBtr0335122	1323	196aa	FBpp0307122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YZA5	NM_001272171 NM_001272171.1 NM_166849.2 NM_166850.2 NP_001259100 NP_001259100.1 NP_726680.1 NP_726681.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Vsp37A-RF	FBtr0335123	1294	200aa	FBpp0307123	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O77259	NM_001272172 NM_001272172.1 NM_080295.3 NM_166848.2 NP_001259101 NP_001259101.1 NP_525034.2 NP_726679.1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Vsp37A-RB	FBtr0089723	1099	196aa	FBpp0088664	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YZA5	NM_001272171.1 NM_166849 NM_166849.2 NM_166850.2 NP_001259100.1 NP_726680 NP_726680.1 NP_726681.1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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