Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: smid FBgn0016983

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Description

smallminded

Gene Synonyms

Location

Primary_assembly 3L: 7,381,614-7,385,637 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants), 71 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
smid-RA	FBtr0076851	3170	944aa	FBpp0089153	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VS62	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
smid-RG	FBtr0331849	3313	910aa	FBpp0304233	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KU82	-	-
smid-RC	FBtr0301611	3167	943aa	FBpp0290826	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P91638 Q8SXZ0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
smid-RH	FBtr0331850	3119	927aa	FBpp0304234	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEE1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
smid-RI	FBtr0333404	3080	910aa	FBpp0305596	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KU82	-	-

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Summary

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