Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: Gcn2 FBgn0019990

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Description

Gcn2

Gene Synonyms

Location

Primary_assembly 3R: 31,395,660-31,402,013 forward strand.

BDGP6.32:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 180 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Gcn2-RC	FBtr0334552	5290	1591aa	FBpp0306619	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KHX7 Q7YU14	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Gcn2-RA	FBtr0085787	5737	1589aa	FBpp0085148	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O01712 O61651 Q9V9X8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Gcn2-RB	FBtr0334551	5284	1589aa	FBpp0306618	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V9X8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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