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DB built by FlyBase

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Gene: Edem1 FBgn0023511

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Description

ER degradation enhancer, mannosidase alpha-like 1

Gene Synonyms

Location

Primary_assembly X: 1,903,704-1,908,827 reverse strand.

BDGP6.54:AE014298.5

About this gene

This gene has 5 transcripts (splice variants), 74 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Edem1-RE	FBtr0332580	3883	1004aa	FBpp0304832	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PG98 O46091	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Edem1-RC	FBtr0070352	4251	982aa	FBpp0070337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JUF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Edem1-RD	FBtr0305583	3935	982aa	FBpp0294034	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JUF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Edem1-RA	FBtr0070354	3670	982aa	FBpp0070339	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JUF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Edem1-RB	FBtr0070353	3221	982aa	FBpp0070338	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JUF8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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