nicotinic Acetylcholine Receptor alpha5
Primary_assembly 2L: 14,040,170-14,094,401 forward strand.
BDGP6.32:AE014134.6
This gene has 4 transcripts (splice variants), 103 orthologues and 21 paralogues.
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|
| nAChRalpha5-RI | FBtr0474155 | 7755 | 837aa | FBpp0423154 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A499GGQ3 | NM_001370005 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| nAChRalpha5-RD | FBtr0300594 | 9129 | 808aa | FBpp0289821 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KT97 | NM_001259098.3 NM_205985 NM_205985.3 NM_205986.4 NP_001246027.1 NP_995707 NP_995707.2 NP_995708.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| nAChRalpha5-RH | FBtr0309867 | 7755 | 808aa | FBpp0301601 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KT97 Q8T5F5 Q8T7V5 | NM_001259098 NM_001259098.3 NM_205985.3 NM_205986.4 NP_001246027 NP_001246027.1 NP_995707.2 NP_995708.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| nAChRalpha5-RB | FBtr0080594 | 4396 | 808aa | FBpp0089367 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q7KT97 | NM_001259098.3 NM_205985.3 NM_205986 NM_205986.4 NP_001246027.1 NP_995707.2 NP_995708 NP_995708.1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
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