Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
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Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG1440 FBgn0030038

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Location

Primary_assembly X: 8,437,057-8,441,264 forward strand.

BDGP6.32:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 145 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG1440-RD	FBtr0339438	2394	551aa	FBpp0308525	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JEJ0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG1440-RC	FBtr0112962	2040	511aa	FBpp0111875	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV22	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG1440-RB	FBtr0112961	1969	368aa	FBpp0111874	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JV24	-	-
CG1440-RA	FBtr0071197	1877	488aa	FBpp0071144	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3F6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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