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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: CG12576 FBgn0031190

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Gene Synonyms

Location

Primary_assembly X: 22,474,851-22,482,357 reverse strand.

BDGP6.54:AE014298.5

About this gene

This gene has 4 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12576-RF	FBtr0346429	2547	369aa	FBpp0312094	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR57	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12576-RA	FBtr0077365	2407	369aa	FBpp0077057	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR57	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12576-RE	FBtr0335046	2404	369aa	FBpp0307050	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VR57	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG12576-RB	FBtr0077366	2020	290aa	FBpp0077058	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQ25	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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