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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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- GO: Cellular component
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DB built by FlyBase

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Gene: IA-2 FBgn0031294

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Description

IA-2 protein tyrosine phosphatase

Gene Synonyms

Location

Primary_assembly 2L: 1,008,378-1,048,053 reverse strand.

BDGP6.54:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 56 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
IA-2-RC	FBtr0301416	6722	1319aa	FBpp0290630	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9BKN7 Q9VPV8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
IA-2-RD	FBtr0301417	9821	1306aa	FBpp0290631	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q59E11 Q7YTY8 Q8MQR5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
IA-2-RE	FBtr0332270	6648	1318aa	FBpp0304559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PAZ4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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