Summary
- Splice variants
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: GABPI FBgn0031495

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Description

beta4GalNAcTB pilot

Gene Synonyms

Location

Primary_assembly 2L: 3,030,539-3,032,300 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants), 74 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
GABPI-RA	FBtr0077652	1650	420aa	FBpp0077337	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VQK9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
GABPI-RC	FBtr0344734	1702	343aa	FBpp0311066	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J6Q6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
GABPI-RB	FBtr0077651	1556	420aa	FBpp0077336	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VQK9	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
GABPI-RD	FBtr0344735	1450	343aa	FBpp0311067	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J6Q6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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