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- Splice variants
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DB built by FlyBase

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Gene: puml FBgn0033226

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Description

pummelig

Gene Synonyms

Location

Primary_assembly 2R: 7,812,504-7,815,486 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 7 transcripts (splice variants), 201 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
puml-RG	FBtr0345697	2695	454aa	FBpp0311746	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U191	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
puml-RA	FBtr0088834	1954	454aa	FBpp0087910	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U191	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
puml-RF	FBtr0339120	1756	454aa	FBpp0308265	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U191	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
puml-RD	FBtr0088836	1694	387aa	FBpp0087912	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQU9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
puml-RE	FBtr0339119	1668	387aa	FBpp0308264	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQU9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
puml-RC	FBtr0088835	1653	387aa	FBpp0087911	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQU9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
puml-RB	FBtr0088837	1458	387aa	FBpp0087913	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JQU9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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