Summary
- Splice variants
- Transcript comparison
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Metazoan Compara
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DB built by FlyBase

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Gene: CG8080 FBgn0033373

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Gene Synonyms

Location

Primary_assembly 2R: 9,089,774-9,092,893 reverse strand.

BDGP6.32:AE013599.5

About this gene

This gene has 5 transcripts (splice variants) and 175 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG8080-RA	FBtr0088633	1808	413aa	FBpp0087714	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7JW73	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG8080-RC	FBtr0310144	1793	408aa	FBpp0301829	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KF27	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG8080-RD	FBtr0310145	1749	409aa	FBpp0301830	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEH3	-	-
CG8080-RB	FBtr0310143	1708	409aa	FBpp0301828	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KFF1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG8080-RE	FBtr0310146	1402	413aa	FBpp0301831	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEG0	-	-

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Summary

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