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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Metazoan Compara
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DB built by FlyBase

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Gene: CG1648 FBgn0033446

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Location

Primary_assembly 2R: 9,810,974-9,820,053 reverse strand.

BDGP6.54:AE013599.5

About this gene

This gene has 3 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG1648-RB	FBtr0088494	884	232aa	FBpp0087578	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z7Z4 C9QP80 Q8IGD2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG1648-RC	FBtr0339403	1392	230aa	FBpp0308495	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K2P3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG1648-RA	FBtr0088493	1047	230aa	FBpp0087577	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7K2P3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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