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DB built by FlyBase

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Gene: HPS4 FBgn0034261

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Description

Hermansky-Pudlak Syndrome 4

Gene Synonyms

Location

Primary_assembly 2R: 17,683,574-17,690,822 forward strand.

BDGP6.54:AE013599.5

About this gene

This gene has 2 transcripts (splice variants) and 44 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
HPS4-RA	FBtr0086840	3522	858aa	FBpp0086017	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAX8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
HPS4-RB	FBtr0086839	3429	834aa	FBpp0086016	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAX6 Q8MT61	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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