Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by FlyBase

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Gene: CG5539 FBgn0034907

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Location

Primary_assembly 2R: 23,804,811-23,806,144 forward strand.

BDGP6.32:AE013599.5

About this gene

This gene has 2 transcripts (splice variants), 136 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5539-RB	FBtr0343269	1334	296aa	FBpp0309934	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W1J5	NM_001299853 NM_001299853.1 NM_137987.2 NP_001286782 NP_001286782.1 NP_611831.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5539-RA	FBtr0072123	1078	296aa	FBpp0072032	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1PFG1 B1PFG4 B1PFG5 B1PFG6 B1PFG8 B1PFH2 B1PFH4 B1PFI7 Q8T3S2 Q9W1J5	NM_001299853.1 NM_137987 NM_137987.2 NP_001286782.1 NP_611831 NP_611831.2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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Gene-based displays