Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Gene families
Literature
Metazoan Compara
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Pan-taxonomic Compara
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- Orthologues
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DB built by FlyBase

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Gene: CG8001 FBgn0035268

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Gene Synonyms

Location

Primary_assembly 3L: 1,756,159-1,759,208 forward strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 171 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG8001-RA	FBtr0072774	2687	748aa	FBpp0072657	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W091	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG8001-RB	FBtr0300292	2672	743aa	FBpp0289520	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SX92	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG8001-RC	FBtr0334073	2540	748aa	FBpp0306198	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W091	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
CG8001-RD	FBtr0334074	2525	743aa	FBpp0306199	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SX92	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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