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Summary
- Splice variants
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DB built by FlyBase

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Gene: Larp4B FBgn0035424

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Description

La-related protein 4B

Gene Synonyms

Location

Primary_assembly 3L: 3,224,838-3,236,604 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 76 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Larp4B-RB	FBtr0073046	9562	1531aa	FBpp0072910	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9I7T7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Larp4B-RD	FBtr0308061	9523	1521aa	FBpp0300406	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H4YFU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Larp4B-RA	FBtr0073045	5172	1521aa	FBpp0072909	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H4YFU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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