Summary
- Splice variants
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DB built by FlyBase

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Gene: Blimp-1 FBgn0035625

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Description

Blimp-1

Gene Synonyms

Location

Primary_assembly 3L: 5,630,983-5,652,094 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 6 transcripts (splice variants), 66 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Blimp-1-RC	FBtr0331807	4403	1216aa	FBpp0304192	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBR0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Blimp-1-RF	FBtr0345593	7517	1203aa	FBpp0311662	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRN4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Blimp-1-RB	FBtr0331806	4398	1216aa	FBpp0304191	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBR0	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Blimp-1-RA	FBtr0077089	4359	1203aa	FBpp0076797	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRN4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Blimp-1-RD	FBtr0331808	4192	1203aa	FBpp0304193	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRN4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Blimp-1-RE	FBtr0331809	3929	1203aa	FBpp0304194	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VRN4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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