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DB built by FlyBase

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Gene: Duba FBgn0036180

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Description

Deubiquitinating enzyme A

Gene Synonyms

Location

Primary_assembly 3L: 11,605,436-11,609,465 reverse strand.

BDGP6.32:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 170 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Duba-RE	FBtr0273305	3276	659aa	FBpp0271813	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTK7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Duba-RF	FBtr0273306	3179	659aa	FBpp0271814	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VTK7	-	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
Duba-RG	FBtr0301145	2890	568aa	FBpp0290368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIE7 Q95S49	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Duba-RD	FBtr0273304	2167	499aa	FBpp0271812	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQF9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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